Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of reproductive organs traits:
21
Number of QTL / associations found:
2,998
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are reproductive organs traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
2453.99385
18
9e-41
2.442857e-40
Chromosome 1
515.07330
18
7.048476e-98
6.696052e-97
Chromosome 2
0.00588
18
0.998329325823115
9.994827e-01
Chromosome 3
1.03551
18
0.998329325823115
9.994827e-01
Chromosome 4
110.30838
18
2.757511e-15
5.239271e-15
Chromosome 5
1766.54856
18
9e-41
2.442857e-40
Chromosome 6
0.08295
18
0.998329325823115
9.994827e-01
Chromosome 7
6630.87138
18
9e-41
2.442857e-40
Chromosome 8
215.18931
18
9.000196e-36
2.137547e-35
Chromosome 9
0.08295
18
0.998329325823115
9.994827e-01
Chromosome 10
6.13494
18
0.9956189
9.994827e-01
Chromosome 11
118.10463
18
9.554919e-17
2.017150e-16
Chromosome 12
88.51689
18
2.662944e-11
4.599631e-11
Chromosome 13
4.46082
18
0.9994827
9.994827e-01
Chromosome 14
1.03551
18
0.998329325823115
9.994827e-01
Chromosome 15
18.49827
18
0.4233102
6.702412e-01
Chromosome 16
508.12461
18
2.041656e-96
1.293049e-95
Chromosome 17
491.81076
18
5.490059e-93
2.607778e-92
Chromosome 18
593.68659
18
1.858301e-114
3.530772e-113
Chi-squared (χ2) test: Which of the 21 reproductive organs traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Cryptorchidism
24.05965
20
0.2397962
2.797622e-01
Epididymis weight
36.21289
20
0.01451815
2.779959e-02
Functional teat number
59.2671
20
9.241556e-06
3.234545e-05
Nonfunctional teat number
32.71578
20
0.03624346
5.854713e-02
Ovary weight
32.87586
20
0.03481411
5.854713e-02
Reproductive tract weight
36.20187
20
0.01456169
2.779959e-02
Seminiferous tubule diameter
32.10688
20
0.04217268
6.325902e-02
Teat number
11.3455
20
0.9367658
9.367658e-01
Teat number symmetry
135.62029
20
3.412500e-19
4.167449e-18
Teat number, difference between sides
56.70795
20
2.272762e-05
6.818286e-05
Teat number, maximum per side
26.44185
20
0.1517098
2.123937e-01
Testicular length
19.12927
20
0.5134382
5.674843e-01
Testicular parenchyma color
135.27272
20
3.968999e-19
4.167449e-18
Testicular percentage
46.82339
20
0.0006206179
1.448108e-03
Testicular weight
104.60996
20
1.868066e-13
1.307646e-12
Testicular width
75.98184
20
1.867509e-08
7.843538e-08
Uterine capacity
11.57578
20
0.929904
9.367658e-01
Vulva height
53.86145
20
6.064792e-05
1.592008e-04
Vulva width
25.41401
20
0.1860486
2.298247e-01
uterine horn length
26.09302
20
0.1627616
2.136246e-01
uterine horn weight
102.82964
20
3.911792e-13
2.053691e-12
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
13523.565090
Number of traits:
21
df
=
360
Number of QTLs:
2,998
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
